Datasets in the Pancreatic Expression Database

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A set of highly relevant published pancreatic cancer papers was manually processed, data checked and results loaded into a relational database.

The data was annotated and integrated with the available Ensembl human genome annotations including gene related annotations, sequences, SNPs, gene structure, multi-species and antibody data from the human protein atlas.

We will be updating the database on a regular basis with new findings in the pancreatic cancer field. We also welcome and support pancreatic cancer scientists worldwide to deposit and share their data. If you have data that you would like to submit or any other enquiry, please email help@pancreasexpression.org.uk

Comparison Unique Gene Count Article Gene Count Technology Platform
Acinar / Ductal Pancreatic cancer (PC) cell line82Alhamdani MS et al (Jun-12) 82 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
Adenovirus sensitivity / insensitivity1188Gadaleta E et al (Jun-11) 1044 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Wang Y et al (Jun-09) 792 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
AGR2-expressing / vector controlled MiaPaCa-2 cell line35Dumartin L et al (Nov-11) 35 Proteomics 2D-DIGE;HPLC-ESI-MS/MS (Q-TOF-MS)
Ampullary adenocarcinoma / Normal duodenum168Van Heek NT et al (Jul-04) 168 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Antigen Immunogenicity in Pancreatic cancer (PDAC,AdSq) / Healthy Serum29Gnjatic S et al (Mar-10) 29 Proteomics ProtoArray Human Protein Microarrays v4.0 (Invitrogen)
AsPC-1 / 25 other Pancreatic cancer (PC) cell Line2472Gadaleta E et al (Jun-11) 2472 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
BxPC-3 / Human Pancreatic Ductal Epithelium (HPDE) cell line166Makawita S et al (Oct-11) 166 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Capan-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line247Makawita S et al (Oct-11) 247 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Central / peripheral Pancreatic tumour zone994Nakamura T et al (Aug-07) 994 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
CFPAC-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line228Makawita S et al (Oct-11) 228 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Chemotherapeutic agent sensitivity / resistance93Arumugam T et al (Jul-09) 93 Transcriptomics Illumina Human-6 v2.0 Expression Beadchip (Illumina)
Chronic pancreatitis (CP) / Healthy Blood70Bauer AS et al (Apr-12) 70 miRNA Geniom Biochip miRNA Homo Sapiens
Chronic pancreatitis (CP) / Healthy Urine24Weeks ME et al (Jul-08) 24 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Chronic pancreatitis (CP) / Normal pancreas (NP)1012Bauer AS et al (Apr-12) 41 miRNA Geniom Biochip miRNA Homo Sapiens
Chen R et al (Aug-07) 118 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Crnogorac-Jurcevic T et al (Nov-05) 23 Proteomics BD PowerBlot Western array (BD Biosciences)
Erkan M et al (Jun-05) 1 Transcriptomics qRT-PCR
Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Freiss H et al (Jun-03) 775 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Shen J et al (Dec-04) 36 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 60 miRNA mirVana miRNA Bioarrays (Ambion)
Chronic pancreatitis (CP) / Normal pancreatic duct (ND) adjacent to cancer21Bloomston M et al (May-07) 21 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Chronic pancreatitis (CP) / Normal pancreatic juice24Chen R et al (Jan-07) 12 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Matsubayashi H et al (Jan-15) 12 Methylomics Methylation-specific PCR (MSP)
Early / Late disease recurrence562Donahue TR et al (Mar-12) 479 Transcriptomics;miRNA GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Nakamura T et al (Mar-04) 83 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
EGFR inhibitor sensitive / resistant tumour952Gadaleta E et al (Jun-11) 929 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Jimeno A et al (Apr-08) 25 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Expression of genes associated with hypoxia-mediated apoptosis in Pancreatic cancer (PC)5Abe T et al (May-05) 5 Transcriptomics;Methylomics qRT-PCR
Expression of genes in Pancreatic cancer (PC)1Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics RT-PCR
Expression of genes in Pancreatic intraepithelial neoplasia (PanIN)1Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics Immunohistochemistry
Expression of genes in Pancreatic stromal cells1Kanno A et al (Jun-08) 1 Transcriptomics;Proteomics Immunohistochemistry
Familial Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreas (NP)84Crnogorac-Jurcevic T et al (Jan-13) 84 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Familial Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreas (NP)84Crnogorac-Jurcevic T et al (Jan-13) 84 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Functioning Pancreatic Endocrine Tumor (F-PET) / Non-functioning Pancreatic Endocrine Tumor (NF-PET)3Roldo C et al (Oct-06) 3 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Gemcitabine sensitivity / resistance16Akada M et al (Apr-05) 16 Transcriptomics Custom-made: Human 10K cDNA array v1.2.1 (Sanger Center UK)
Hh pathway antagonist treated / vehicle controlled tumour6Gadaleta E et al (Jun-11) 6 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
High / Less metastatic Pancreatic ductal adenocarcinoma (PDAC)70Mees ST et al (Aug-11) 70 miRNA Human miRNA Microarray v1.0 (Agilent)
Highly metastatic / parental SW1990 cell line29Shi W et al (Jan-11) 29 Proteomics SpringBio Antibody Microarray
Hsp 90 Inhibitor treated / untreated tumour1736Gadaleta E et al (Jun-11) 1585 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Song D et al (Oct-08) 185 Transcriptomics;Proteomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
HuPT4 / 25 other Pancreatic cancer (PC) cell Line1672Gadaleta E et al (Jun-11) 1672 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Hypoxic / Normoxic Pancreatic cancer (PC)1Abe T et al (May-05) 1 Transcriptomics;Methylomics qRT-PCR
Identification of Chronic pancreatitis (CP) juice proteome41Chen R et al (Jan-07) 41 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Identification of gastroduodenal fluid proteome49Paulo JA et al (Sep-10) 49 Proteomics GeLC-MS/MS (LTQ-FT-MS)
Identification of Healthy Plasma miRnome327Weber JA et al (Nov-10) 327 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Plasma proteome1107Anderson NL et al (Apr-04) 1107 Meta Analysis Reanalysis:LC/LC/LC-2DE-MS/MS (MALDI-TOF-MS and IT-MS);Reanalysis:LC/LC-MS/MS (IT-MS)
Identification of Healthy Saliva miRnome402Weber JA et al (Nov-10) 402 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Urine miRnome195Weber JA et al (Nov-10) 195 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Urine proteome1379Adachi J et al (Sep-06) 1379 Proteomics Nano LC-MS/MS/MS (LTQ-FT-MS and LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) and Human pancreatic ductal epithelium (HPDE) cell line secretome847Schiarea S et al (Sep-10) 847 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) and Lymph-node metastatis proteome238Naidoo K et al (Apr-12) 238 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) ascitic fluid proteome654Kosanam H et al (Dec-11) 654 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) Bile proteome473Farina A et al (Apr-11) 473 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) juice proteome1556Chen R et al (Jul-06) 48 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Gronborg M et al (Sep-Oct-04) 203 Proteomics Nano LC-MS/MS (Q-TOF-MS)
Makawita S et al (Oct-11) 1478 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) miRNome126Szafranska AE et al (Jun-07) 126 miRNA mirVana miRNA Bioarrays (Ambion)
Identification of Pancreatic ductal adenocarcinoma (PDAC) secretome178Zhang H et al (Jul-09) 178 Proteomics HPLC-ESI-MS/MS (Q-TOF-MS)
Identification of Pancreatic juice proteome149Chen R et al (Jan-07) 32 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Doyle CJ et al (Mar-12) 132 Proteomics LC-MS/MS (LTQ-IT-MS)
Identification of Pancreatic miRNome170Szafranska AE et al (Jun-07) 170 miRNA mirVana miRNA Bioarrays (Ambion)
Identification of Pancreatic proteome291Hu L et al (Feb-04) 291 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Intraductal papillary mucinous neoplasms (IPMN) / Chronic pancreatitis (CP) juice5Matsubayashi H et al (Jan-15) 5 Methylomics Quantitative methylation-specific PCR (QMSP)
Intraductal papillary mucinous neoplasms (IPMN) / Human pancreatic ductal epithelium (HPDE) cell line126Terris B et al (May-02) 126 Transcriptomics Custom-made: Human 5K1 cDNA microarray (Sanger Center UK)
Intraductal papillary mucinous neoplasms (IPMN) / Normal pancreatic duct (ND)498Sato N et al (Mar-04) 498 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Intraductal papillary mucinous neoplasms (IPMN) / Normal pancreatic juice11Matsubayashi H et al (Jan-15) 11 Methylomics Methylation-specific PCR (MSP)
Intraductal papillary mucinous neoplasms (IPMN) with / without invasive ductal adenocarcinoma (PDAC)240Sato N et al (Mar-04) 240 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Less-differentiated / Well-differentiated Pancreatic ductal adenocarcinoma (PDAC)9Zhang H et al (Jul-09) 9 Proteomics HPLC-ESI-MS/MS (Q-TOF-MS)
Long-term / Short-term survival15Bloomston M et al (May-07) 7 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Vimalachandran D et al (Apr-05) 1 Proteomics Immunohistochemistry
Winter C et al (May-12) 7 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Metastatic / Localized Pancreatic ductal adenocarcinoma (PDAC)6Stratford JK et al (Jul-10) 6 Transcriptomics Whole Human Genome Microarray 4x44K (Agilent)
Metastatic Pancreatic cancer (PC) / Normal pancreas (NP)9Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Metastatic Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP)1Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Methotrexate sensitivity / resistance1621Gadaleta E et al (Jun-11) 299 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Selga E et al (Sep-09) 1493 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Methylation of genes associated with hypoxia-mediated apoptosis in Pancreatic cancer (PC)1Abe T et al (May-05) 1 Transcriptomics;Methylomics Methylation-specific PCR (MSP)
MiaPaCa-2 / 25 other Pancreatic cancer (PC) cell Line1557Gadaleta E et al (Jun-11) 1557 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
MiaPaCa-2 / Human Pancreatic Ductal Epithelium (HPDE) cell line247Makawita S et al (Oct-11) 247 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
miRNA association with overall survival19Jamieson NB et al (Jan-12) 19 miRNA Human miRNA Microarray v2.0 (Agilent)
Mucinous cystic neoplasm (MCN) epithelium / Normal pancreatic ductal (ND) epithelium 31Fukushima N et al (Dec-04) 31 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Mucinous cystic neoplasm (MCN) ovarian-type stroma / Chronic pancreatitis (CP) fibrous stroma23Fukushima N et al (Dec-04) 23 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Non-benign pancreatic diseases / Normal pancreas (NP)1Dumartin L et al (Nov-11) 1 Proteomics Immunohistochemistry
Non-functioning Pancreatic Endocrine Tumor (NF-PET) / Normal Islet1168Capurso G et al (Jun-06) 997 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Maitra A et al (Dec-03) 188 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Non-functioning Pancreatic Endocrine Tumor (NF-PET) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Normal pancreas (NP) adjacent to cancer / Normal pancreas (NP)2735Gadaleta E et al (Jun-11) 2734 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pogue-Geile KL et al (Dec-06) 1 Transcriptomics qRT-PCR (Applied Biosystems 7700 Sequence Detection Instrument with TaqMan)
Normal pancreas (NP) adjacent to cancer resembling ND / Normal pancreas (NP)1017Gadaleta E et al (Jun-11) 1017 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Normal pancreas (NP) adjacent to cancer resembling PDAC / Normal pancreas (NP)3446Gadaleta E et al (Jun-11) 3446 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Normal pancreatic duct (ND) / Normal pancreas (NP)1Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Normal pancreatic juice single / pooled11Chen R et al (Jul-06) 11 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Panc-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line285Makawita S et al (Oct-11) 285 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Pancreatic Acinar cell carcinoma (PACC) / Normal pancreas (NP)31Roldo C et al (Oct-06) 31 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic cancer (PC) / Benign pancreatic disease Blood40Yu KH et al (Sep-Oct-05) 40 Proteomics 2D-DIGE;MALDI-MS/MS (MALDI-TOF-MS)
Pancreatic cancer (PC) / Healthy Saliva34Zhang L et al (Mar-10) 34 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pancreatic cancer (PC) / Human pancreatic ductal epithelium (HPDE) cell line1Akada M et al (Apr-05) 1 Transcriptomics qRT-PCR
Pancreatic cancer (PC) / Human umbilical endothelial (HUVEC) cell line165Alhamdani MS et al (Jun-12) 165 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
Pancreatic cancer (PC) / Normal pancreas (NP)10Akada M et al (Apr-05) 1 Transcriptomics qRT-PCR
Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Pancreatic cancer (PC) / Normal pancreas (NP) adjacent to cancer124Piepoli A et al (Mar-12) 124 miRNA GeneChip miRNA Array (Affymetrix)
Pancreatic cancer (PC) tissue and cell line / Normal pancreas (NP) and gastrointestinal mucosa108Iacobuzio-Donahue CA et al (Apr-02) 108 Transcriptomics GeneChip Human Genome U95 Set (Affymetrix)
Pancreatic cancer (PDAC,IPMN) / Normal pancreas (NP)18Lee EJ et al (Mar-07) 18 miRNA qPCR (TaqMan microRNA Assays)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP)1007Bauer AS et al (Apr-12) 99 miRNA Geniom Biochip miRNA Homo Sapiens
Bloomston M et al (May-07) 22 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Crnogorac-Jurcevic T et al (Nov-05) 68 Proteomics BD PowerBlot Western array (BD Biosciences)
Freiss H et al (Jun-03) 775 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Logsdon CD et al (May-03) 89 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics qRT-PCR
Shen J et al (Dec-04) 33 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 46 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP) juice5Matsubayashi H et al (Jan-15) 5 Methylomics Quantitative methylation-specific PCR (QMSP)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP) Urine26Weeks ME et al (Jul-08) 26 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Blood145Bauer AS et al (Apr-12) 145 miRNA Geniom Biochip miRNA Homo Sapiens
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Plasma9Kakisaka T et al (Jun-07) 9 Proteomics 2D-DIGE;LC-MS/MS (LTQ-IT-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Urine34Weeks ME et al (Jul-08) 34 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Human pancreatic ductal epithelium (HPDE) cell line1500Mahon PC et al (Jul-07) 1 Proteomics Western blotting
Schiarea S et al (Sep-10) 112 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Thu KL et al (Jan-13) 1284 Methylomics;Transcriptomics Infinium 27k Human Methylation Beadchip (Illumina)
Zhang Y et al (Apr-09) 114 miRNA qRT-PCR (QuantiMir System)
Pancreatic ductal adenocarcinoma (PDAC) / Lymph-node metastasis124Naidoo K et al (Apr-12) 124 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP)4528Badea L et al (Nov-Dec-08) 231 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Bauer AS et al (Apr-12) 163 miRNA Geniom Biochip miRNA Homo Sapiens
Chen R et al (Oct-05) 86 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Crnogorac-Jurcevic T et al (Nov-05) 270 Proteomics BD PowerBlot Western array (BD Biosciences)
Erkan M et al (Jun-05) 1 Transcriptomics qRT-PCR
Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Freiss H et al (Jun-03) 775 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Gadaleta E et al (Jun-11) 3364 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Grutzmann R et al (Jul-05) 545 Meta Analysis Reanalysis:GeneChip Human Full Length Array HuGeneFL (Affymetrix);Reanalysis:Custom Human 10K cDNA array v1.2.1 (Sanger Center UK);Reanalysis:Custom 45K cDNA microArray (Stanford)
Jamieson NB et al (Jan-12) 87 miRNA Human miRNA Microarray v2.0 (Agilent)
Logsdon CD et al (May-03) 89 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Mahon PC et al (Jul-07) 1 Proteomics Immunohistochemistry
Pei H et al (Sep-09) 68 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pogue-Geile KL et al (Dec-06) 112 Transcriptomics Custom-made: cDNA microarray from UniGene (243 sequence-verified Unigene clones between markers D4S2976 and D4S415)
Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics qRT-PCR
Shen J et al (Dec-04) 38 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 74 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP) adjacent to cancer338Lu Z et al (Dec-04) 99 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Segara D et al (May-05) 39 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Tan ZJ et al (Apr-03) 55 Transcriptomics Commercial cDNA microarray (United Gene Technique)
Zhang G et al (Feb-12) 37 Transcriptomics GeneChip Human Gene 1.0 ST Array (Affymetrix)
Zhang Y et al (Apr-09) 114 miRNA qRT-PCR (QuantiMir System)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic duct (ND)969Buchholz M et al (Oct-05) 435 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Crnogorac-Jurcevic T et al (Jul-02) 16 Transcriptomics Human Cancer Atlas cDNA Expression Array (Clontech)
Erkan M et al (Jun-05) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Grutzmann R et al (Sep-Oct-04) 27 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Nakamura T et al (Mar-04) 521 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Vimalachandran D et al (Apr-05) 1 Proteomics Immunohistochemistry
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic duct (ND) adjacent to cancer28Bloomston M et al (May-07) 28 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic juice26Chen R et al (Jul-06) 14 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Matsubayashi H et al (Jan-15) 12 Methylomics Methylation-specific PCR (MSP)
Pancreatic ductal adenocarcinoma (PDAC) and Liver metastasis / Normal liver (NL)33Barry S et al (Mar-13) 33 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) and Liver metastasis / Normal pancreas (NP)33Barry S et al (Mar-13) 33 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Chronic pancreatitis (CP) tissue94Szafranska AE et al (Jun-07) 94 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Normal pancreas (NP) tissue191Logsdon CD et al (May-03) 89 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Szafranska AE et al (Jun-07) 102 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Normal pancreatic duct (ND), Normal pancreas (NP) and Human pancreatic ductal epithelium (HPDE) cell line1529Vincent A et al (May-11) 1529 Methylomics Human CpG Island ChIP-on-Chip Microarray 244K (Agilent)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Pancreatic ductal adenocarcinoma (PDAC) tissue 84Szafranska AE et al (Jun-07) 84 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line and xenorgaft / Normal pancreatic duct (ND) tissue and Human pancreatic ductal epithelium (HPDE) cell line535Jones S et al (Sep-08) 535 Transcriptomics Digital Gene Expression - Tag Profiling preparation kit (Illumina)
Pancreatic ductal adenocarcinoma (PDAC) Liver metastasis / Normal pancreas (NP)27Chaica NV et al (Mar-12) 27 Transcriptomics Whole Human Genome Microarray 4x44K (Agilent)
Pancreatic ductal adenocarcinoma (PDAC) Liver metastasis positive / negative153Nakamura T et al (Mar-04) 153 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Pancreatic ductal adenocarcinoma (PDAC) Lymph-node metastasis / Normal pancreas (NP)2Chaica NV et al (Mar-12) 2 Transcriptomics Whole Human Genome Microarray 4x44K (Agilent)
Pancreatic ductal adenocarcinoma (PDAC) Lymph-node metastasis positive / negative68Nakamura T et al (Mar-04) 68 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Pancreatic ductal adenocarcinoma (PDAC) stroma / Chronic pancreatitis (CP) stroma97Pilarsky C et al (Dec-08) 97 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) stroma / Chronic pancreatitis (CP) stroma, Pancreatic ductal adenocarcinoma (PDAC) epithelia and Normal pancreas (NP) epithelia17Pilarsky C et al (Dec-08) 17 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic Endocrine Tumor (PET) / Normal pancreas (NP)83Roldo C et al (Oct-06) 83 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) / Pancreatic Acinar cell carcinoma (PACC) 10Roldo C et al (Oct-06) 10 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) with / without Liver metastasis1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic intraepithelial neoplasia (PanIN-1) / Normal pancreas (NP)1Pogue-Geile KL et al (Dec-06) 1 Transcriptomics Custom-made: cDNA microarray from UniGene (243 sequence-verified Unigene clones between markers D4S2976 and D4S415)
Pancreatic intraepithelial neoplasia (PanIN-1,2,3) / Normal pancreatic duct (ND) adjacent to PanIN59Yu J et al (Feb-12) 59 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-1B) / Normal pancreatic duct (ND)36Buchholz M et al (Oct-05) 36 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-1B,2) / Normal pancreatic duct (ND)160Prasad NB et al (Mar-05) 160 Transcriptomics Custom-made: cDNA microarray from IMAGE (over 15,000 cDNA clones from sequence-verified IMAGE clones)
Pancreatic intraepithelial neoplasia (PanIN-2) / Normal pancreatic duct (ND)326Buchholz M et al (Oct-05) 326 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreas (NP)1Pogue-Geile KL et al (Dec-06) 1 Transcriptomics qRT-PCR (Applied Biosystems 7700 Sequence Detection Instrument with TaqMan)
Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreatic duct (ND) adjacent to PanIN and Pancreatic intraepithelial neoplasia (PanIN-1)9Yu J et al (Feb-12) 9 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND)439Buchholz M et al (Oct-05) 439 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND) adjacent to PanIN36Yu J et al (Feb-12) 36 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-3) / Pancreatic intraepithelial neoplasia (PanIN-1,2)10Yu J et al (Feb-12) 10 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic stellate cells / Pancreatic ductal adenocarcinoma (PDAC) cell line1Kanno A et al (Jun-08) 1 Transcriptomics;Proteomics qRT-PCR
Parenchyma adjacent to Chronic pancreatitis (CP) / Normal pancreas (NP) parenchyma40Fukushima N et al (Jun-05) 40 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Parenchyma adjacent to Pancreatic cancer (PC) / Normal pancreas (NP) parenchyma57Fukushima N et al (Jun-05) 57 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Parenchyma adjacent to Pancreatic cancer (PC) / Parenchyma adjacent to Chronic pancreatitis (CP) 19Fukushima N et al (Jun-05) 19 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Post-Silencing and induction effect in Pancreatic intraepithelial neoplasia (PanIN-1,2,3) / Normal pancreatic duct (ND) adjacent to PanIN17Yu J et al (Feb-12) 17 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Post-Silencing and induction effect in Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND) adjacent to PanIN35Yu J et al (Feb-12) 35 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Primary / Metastatic Pancreatic cancer (PC)24Alhamdani MS et al (Jun-12) 0 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
McKinney KQ et al (Sept-Oct-12) 24 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Primary Pancreatic ductal adenocarcinoma (PDAC) / Liver metastasis14Chaica NV et al (Mar-12) 14 Transcriptomics Whole Human Genome Microarray 4x44K (Agilent)
S100P gene-overexpressing / vector-controlled Panc-1 cell line21Whiteman HJ et al (Sep-07) 21 Proteomics 2D-DIGE;HPLC-ESI-MS/MS (Q-TOF-MS)
SU86.86 / Human Pancreatic Ductal Epithelium (HPDE) cell line233Makawita S et al (Oct-11) 233 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Well-differentiated endocrine carcinoma (WDEC) / Pancreatic Acinar cell carcinoma (PACC) 4Roldo C et al (Oct-06) 4 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Well-differentiated endocrine carcinoma (WDEC) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
YPAC / 25 other Pancreatic cancer (PC) cell Line1851Gadaleta E et al (Jun-11) 1851 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
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